Gut Microbiota Gut Microbiata NCBI ID Gut Microbiota ID Classification Substrate Substrate PubChem CID Substrate HMDB ID Substrate ChEBI ID Metabolite Metabolite PubChem CID Metabolite HMDB ID Metabolite ChEBI ID Christensenella minuta YIT 12065T gm0883 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain Salicin 439503 HMDB0003546 CHEBI:17814 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain D-Xylose 135191 HMDB0000098 CHEBI:53455 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain L-Arabinose 439195 HMDB0000646 CHEBI:17535 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain L-Rhamnose 25310 HMDB0012305 CHEBI:62346 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain D-Mannose 18950 HMDB0000169 CHEBI:4208 Acetate 175 CHEBI:30089 Christensenella minuta YIT 12065T gm0883 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Butyrate 104775 CHEBI:17968 Christensenella minuta YIT 12065T gm0883 strain Salicin 439503 HMDB0003546 CHEBI:17814 Butyrate 104775 CHEBI:17968 Christensenella minuta YIT 12065T gm0883 strain D-Xylose 135191 HMDB0000098 CHEBI:53455 Butyrate 104775 CHEBI:17968 Christensenella minuta YIT 12065T gm0883 strain L-Arabinose 439195 HMDB0000646 CHEBI:17535 Butyrate 104775 CHEBI:17968 Christensenella minuta YIT 12065T gm0883 strain L-Rhamnose 25310 HMDB0012305 CHEBI:62346 Butyrate 104775 CHEBI:17968 Christensenella minuta YIT 12065T gm0883 strain D-Mannose 18950 HMDB0000169 CHEBI:4208 Butyrate 104775 CHEBI:17968 Enterococcus sp. 45 1343173 gm0884 species Orientin 5281675 HMDB0030614 CHEBI:7781 Luteolin 5280445 HMDB0005800 CHEBI:15864 Clostridium scindens VPI 12708 29347 gm0885 strain Bile acid 439520 CHEBI:22868 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium scindens VPI 12708 29347 gm0885 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium scindens VPI 12708 29347 gm0885 strain Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium scindens VPI 12708 29347 gm0885 strain Bile acid 439520 CHEBI:22868 Lithocholic acid 9903 HMDB0000761 CHEBI:16325 Clostridium scindens VPI 12708 29347 gm0885 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 Lithocholic acid 9903 HMDB0000761 CHEBI:16325 Clostridium scindens VPI 12708 29347 gm0885 strain Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Lithocholic acid 9903 HMDB0000761 CHEBI:16325 Haemophilus parainfluenzae 729 gm0358 species Cholesterol 5997 HMDB0000067 CHEBI:16113 (4S)-4-[(2E)-Oct-2-enoyloxy]-4-(trimethylazaniumyl)butanoate 53481667 CHEBI:176711 Haemophilus parainfluenzae 729 gm0358 species Cholesterol 5997 HMDB0000067 CHEBI:16113 Bile acid 439520 CHEBI:22868 Haemophilus parainfluenzae 729 gm0358 species Cholesterol 5997 HMDB0000067 CHEBI:16113 Propionate 104745 CHEBI:17272 Faecalibacterium prausnitzii 853 gm0327 species Cholesterol 5997 HMDB0000067 CHEBI:16113 Bile acid 439520 CHEBI:22868 Eubacterium ramulus ATTC 29099 gm0891 strain Cynaroside 5280637 HMDB0035588 CHEBI:27994 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Taxifolin 439533 CHEBI:17948 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Phloretin 4788 HMDB0003306 CHEBI:17276 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Luteolin 5280445 HMDB0005800 CHEBI:15864 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 CHEBI:50202 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Eriodictyol 440735 HMDB0005810 CHEBI:28412 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Kaempferol 5280863 HMDB0005801 CHEBI:28499 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Rutin 5280805 HMDB0003249 CHEBI:28527 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Quercetin 5280343 HMDB0005794 CHEBI:16243 Phenolic acid CHEBI:166890 Eubacterium ramulus ATTC 29099 gm0891 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Acetate 175 CHEBI:30089 Eubacterium ramulus ATTC 29099 gm0891 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Butyrate 104775 CHEBI:17968 Eubacterium ramulus ATTC 29099 gm0891 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Kaempferol-3-sorphoroside Eubacterium ramulus ATTC 29099 gm0891 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Eubacterium ramulus ATTC 29099 gm0891 strain Taxifolin 439533 CHEBI:17948 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Eubacterium ramulus ATTC 29099 gm0891 strain Luteolin 5280445 HMDB0005800 CHEBI:15864 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Eubacterium ramulus ATTC 29099 gm0891 strain Eriodictyol 440735 HMDB0005810 CHEBI:28412 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Eubacterium ramulus ATTC 29099 gm0891 strain Kaempferol 5280863 HMDB0005801 CHEBI:28499 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Eubacterium ramulus ATTC 29099 gm0891 strain 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 CHEBI:50202 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Eubacterium ramulus ATTC 29099 gm0891 strain Kaempferol-3-sorphoroside-7-glucoside Kaempferol-3-sorphoroside Eubacterium ramulus ATTC 29099 gm0891 strain Quercetin 5280343 HMDB0005794 CHEBI:16243 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Eubacterium ramulus ATTC 29099 gm0891 strain Phloroglucinol 359 HMDB0013675 CHEBI:16204 Lachnospiraceae 186803 gm0386 family Indoxyl sulfate 10258 HMDB0000682 CHEBI:43355 Lachnospiraceae 186803 gm0386 family p-Cresol sulfate 4615423 HMDB0011635 CHEBI:82914 Lachnospiraceae 186803 gm0386 family Phenylacetylglutamine 92258 HMDB0006344 CHEBI:17884 Clostridium sp. TM-40 371143 gm0893 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Clostridium sp. TM-40 371143 gm0893 species Daidzin 107971 HMDB0033991 CHEBI:42202 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Slackia sp. NATTS 647703 gm0894 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Escherichia coli BW25113 679895 gm0895 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 2,3-Butanediol 262 HMDB0003156 CHEBI:62064 Escherichia coli BW25113 679895 gm0895 strain Pyruvate 107735 CHEBI:15361 2-Acetoxypropanoic acid 79041 Escherichia coli BW25113 679895 gm0895 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetoin 179 HMDB0003243 CHEBI:15688 Escherichia coli BW25113 679895 gm0895 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 2,3-Butanedione 650 HMDB0003407 CHEBI:16583 Escherichia coli JCL166 gm0896 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 2,3-Butanediol 262 HMDB0003156 CHEBI:62064 Escherichia coli JCL166 gm0896 strain Pyruvate 107735 CHEBI:15361 2-Acetoxypropanoic acid 79041 Escherichia coli JCL166 gm0896 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetoin 179 HMDB0003243 CHEBI:15688 Escherichia coli JCL166 gm0896 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 2,3-Butanedione 650 HMDB0003407 CHEBI:16583 Klebsiella 570 gm0380 genus Choline 305 HMDB0000097 CHEBI:15354 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Klebsiella 570 gm0380 genus Carnitine 288 CHEBI:17126 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Klebsiella 570 gm0380 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Escherichia 561 gm0304 genus Choline 305 HMDB0000097 CHEBI:15354 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Escherichia 561 gm0304 genus Carnitine 288 CHEBI:17126 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Escherichia 561 gm0304 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Clostridium orbiscindens I1 gm0897 strain Hesperetin dihydrochalcone 147608 HMDB0128062 3-Hydroxy-4-methoxybenzenepropanoic acid 2752054 HMDB0131138 Eubacterium ramulus DSM 16296 gm0898 strain beta-D-Glucopyranoside, 3,5-dihydroxy-4-(3-(3-hydroxy-4-methoxyphenyl)-1-oxopropyl)phenyl 168008 Hesperetin dihydrochalcone 147608 HMDB0128062 Eubacterium ramulus DSM 16296 gm0898 strain Hesperetin dihydrochalcone 147608 HMDB0128062 3-Hydroxy-4-methoxybenzenepropanoic acid 2752054 HMDB0131138 Eggerthella sp. YY7918 502558 gm0915 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Eggerthella sp. YY7918 502558 gm0915 species Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Firmicutes 1239 gm0332 phylum Butyrate 104775 CHEBI:17968 Firmicutes 1239 gm0332 phylum Butyrate 104775 CHEBI:17968 Firmicutes 1239 gm0332 phylum Butyrate 104775 CHEBI:17968 Firmicutes 1239 gm0332 phylum Butyrate 104775 CHEBI:17968 Fusobacteriia 203490 gm0343 class Butyrate 104775 CHEBI:17968 Fusobacteriia 203490 gm0343 class Butyrate 104775 CHEBI:17968 Fusobacteriia 203490 gm0343 class Butyrate 104775 CHEBI:17968 Fusobacteriia 203490 gm0343 class Butyrate 104775 CHEBI:17968 Lactobacillus mucosae EPI2 gm0947 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Lactobacillus mucosae EPI2 gm0947 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 Enterococcus faecium EPI1 gm0948 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Enterococcus faecium EPI1 gm0948 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 Finegoldia magna EPI3 gm0949 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Finegoldia magna EPI3 gm0949 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 Roseburia sp. A2-181 gm0956 species Butyrate 104775 CHEBI:17968 Roseburia sp. A2-183 180589 gm0957 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Butyrate 104775 CHEBI:17968 Clostridium sp. L2-50 411489 gm0958 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Eggerthella lenta rK3 gm0959 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 1-(3,4-Dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-2-propanol 21722175 HMDB0127722 Eggerthella lenta rK3 gm0959 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 1-(3,4-Dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-2-propanol 21722175 HMDB0127722 Flavonifractor plautii aK2 gm0960 strain 1-(3,4-Dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-2-propanol 21722175 HMDB0127722 3,4-diHPP-2-ol Flavonifractor plautii aK2 gm0960 strain 1-(3,4-Dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-2-propanol 21722175 HMDB0127722 3,4-diHPVL Lactobacillus 1578 gm0393 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Bifidobacterium 1678 gm0105 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Blautia 572511 gm0117 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Collinsella 102106 gm0217 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Faecalibacterium prausnitzii ATCC 27768T gm0961 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27766 gm0962 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii L2-6 718252 gm0934 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27768T gm0961 strain D-Lactic acid 61503 HMDB0001311 CHEBI:42111 Faecalibacterium prausnitzii ATCC 27766 gm0962 strain D-Lactic acid 61503 HMDB0001311 CHEBI:42111 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain D-Lactic acid 61503 HMDB0001311 CHEBI:42111 Faecalibacterium prausnitzii L2-6 718252 gm0934 strain D-Lactic acid 61503 HMDB0001311 CHEBI:42111 Prevotellaceae 171552 gm0540 family Succinate 160419 CHEBI:30031 Veillonellaceae 31977 gm0680 family Succinate 160419 CHEBI:30031 Faecalibacterium prausnitzii 853 gm0327 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Mollicutes 31969 gm0455 class 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Coprococcus 33042 gm0223 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Ruminococcaceae 541000 gm0581 family 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Chistensenellaceae 990719 gm0827 family 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Tenericutes 544448 gm0637 phylum 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Lachnospiraceae 186803 gm0386 family 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Eubacterium 1730 gm0309 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Eubacterium dolichum 1263076 gm0311 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Caffeic acid 689043 HMDB0001964 CHEBI:16433 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 3-(3-Hydroxyphenyl)propanoic acid 91 HMDB0000375 CHEBI:1427 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Dehydroxychlorogenic acid Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Dihydrochlorogenic acid Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 2,3-Dihydroxypropyl (E)-3-(3,4-dihydroxyphenyl)prop-2-enoate 5315606 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Dihydrocaffeoyl-glycerol Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 3-Hydroxyphenethyl alcohol 83404 Bifidobacterium 1678 gm0105 genus Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Escherichia coli BL21 511693 gm0963 strain Rutin 5280805 HMDB0003249 CHEBI:28527 Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Clostridium orbiscindens I2 gm0965 strain Taxifolin 439533 CHEBI:17948 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Clostridium orbiscindens I2 gm0965 strain Quercetin 5280343 HMDB0005794 CHEBI:16243 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Clostridium orbiscindens I2 gm0965 strain Eriodictyol 440735 HMDB0005810 CHEBI:28412 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Clostridium orbiscindens I2 gm0965 strain Luteolin 5280445 HMDB0005800 CHEBI:15864 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Clostridium orbiscindens I2 gm0965 strain Apigenin 5280443 HMDB0002124 CHEBI:18388 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Clostridium orbiscindens I2 gm0965 strain 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 CHEBI:50202 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Clostridium orbiscindens I2 gm0965 strain Phloretin 4788 HMDB0003306 CHEBI:17276 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Slackia faecicanis sp.CCUG 48399 gm0966 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Phascolarctobacterium succinatutens YIT 12067T gm0968 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Phascolarctobacterium succinatutens YIT 12068T gm0969 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Slackia isoflavoniconvertens HE8 gm0970 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Slackia isoflavoniconvertens HE8 gm0970 strain Genistein 5280961 HMDB0003217 CHEBI:28088 5-OH-Equol 9795113 Eubacterium ramulus 39490 gm0737 species Genistein 7-O-glucoside 44257273 2-(4-Hydroxyphenyl)propionic acid, (2S)- 6971268 Eubacterium ramulus 39490 gm0737 species Genistein 5280961 HMDB0003217 CHEBI:28088 2-(4-Hydroxyphenyl)propionic acid, (2S)- 6971268 Eubacterium ramulus 39490 gm0737 species Daidzein 5281708 HMDB0003312 CHEBI:28197 O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 Eubacterium limosum 1736 gm0315 species Isoxanthohumol 513197 CHEBI:171798 8-Prenylnaringenin 480764 CHEBI:50207 Clostridium 1485 gm0187 genus Butyrate 104775 CHEBI:17968 Veillonella 29465 gm0676 genus Propionate 104745 CHEBI:17272 Ruminococcus 1263 gm0587 genus Alanine 5950 HMDB0062251 CHEBI:16977 Ruminococcus 1263 gm0587 genus Leucine 6106 HMDB0000687 CHEBI:15603 Ruminococcus 1263 gm0587 genus l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Ruminococcus 1263 gm0587 genus Glycine 750 HMDB0000123 CHEBI:15428 Ruminococcus 1263 gm0587 genus Proline 145742 HMDB0000162 CHEBI:17203 Dorea 189330 gm0266 genus Alanine 5950 HMDB0062251 CHEBI:16977 Dorea 189330 gm0266 genus Leucine 6106 HMDB0000687 CHEBI:15603 Dorea 189330 gm0266 genus l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Dorea 189330 gm0266 genus Glycine 750 HMDB0000123 CHEBI:15428 Dorea 189330 gm0266 genus Proline 145742 HMDB0000162 CHEBI:17203 Blautia 572511 gm0117 genus Alanine 5950 HMDB0062251 CHEBI:16977 Blautia 572511 gm0117 genus Leucine 6106 HMDB0000687 CHEBI:15603 Blautia 572511 gm0117 genus l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Blautia 572511 gm0117 genus Glycine 750 HMDB0000123 CHEBI:15428 Blautia 572511 gm0117 genus Proline 145742 HMDB0000162 CHEBI:17203 Ruminococcus 1263 gm0587 genus Serine 5951 HMDB0000187 CHEBI:17115 Dorea 189330 gm0266 genus Serine 5951 HMDB0000187 CHEBI:17115 Blautia 572511 gm0117 genus Serine 5951 HMDB0000187 CHEBI:17115 Turicibacter 191303 gm0653 genus Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Bifidobacterium longum 216816 gm0112 species Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Lactobacillus mucosae 97478 gm0403 species Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Lactobacillus zeae 57037 gm0414 species Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Eubacterium 1730 gm0309 genus 3-Hydroxybenzoic acid 7420 HMDB0002466 CHEBI:30764 Eubacterium 1730 gm0309 genus 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Collinsella aerofaciens 74426 gm0829 species Sedoheptulose 5459879 CHEBI:16802 Collinsella aerofaciens 74426 gm0829 species Citric acid 311 HMDB0000094 CHEBI:30769 Collinsella aerofaciens 74426 gm0829 species Tricarballylic acid 14925 HMDB0031193 CHEBI:45969 Escherichia coli 562 gm0305 species Pipecolic acid 849 HMDB0000070 CHEBI:17964 Faecalibacterium 216851 gm0326 genus Leucine 6106 HMDB0000687 CHEBI:15603 Faecalibacterium 216851 gm0326 genus Serine 5951 HMDB0000187 CHEBI:17115 Faecalibacterium prausnitzii 853 gm0327 species Serine 5951 HMDB0000187 CHEBI:17115 Faecalibacterium prausnitzii 853 gm0327 species Leucine 6106 HMDB0000687 CHEBI:15603 Faecalibacterium prausnitzii 853 gm0327 species Malic acid 525 CHEBI:6650 Lactobacillus ruminis 1623 gm0830 species Glycine 750 HMDB0000123 CHEBI:15428 Dialister 39948 gm0262 genus Tartaric acid 875 HMDB0062642 CHEBI:15674 Catenibacterium 135858 gm0160 genus Tartaric acid 875 HMDB0062642 CHEBI:15674 Turicibacter 191303 gm0653 genus Tartaric acid 875 HMDB0062642 CHEBI:15674 Ruminococcus bromii 40518 gm0588 species Tartaric acid 875 HMDB0062642 CHEBI:15674 Parabacteroides distasonis 823 gm0496 species Tartaric acid 875 HMDB0062642 CHEBI:15674 Bacteroides caccae 47678 gm0079 species Tartaric acid 875 HMDB0062642 CHEBI:15674 Akkermansia 239934 gm0029 genus Creatine 586 HMDB0000064 CHEBI:16919 Coprococcus catus 116085 gm0788 species Creatine 586 HMDB0000064 CHEBI:16919 Mitsuokella 52225 gm0449 genus Creatine 586 HMDB0000064 CHEBI:16919 Weissella 46255 gm0689 genus Creatine 586 HMDB0000064 CHEBI:16919 Lactobacillus 1578 gm0393 genus Creatine 586 HMDB0000064 CHEBI:16919 Mitsuokella multacida 52226 gm0450 species Creatine 586 HMDB0000064 CHEBI:16919 Lactobacillus ruminis 1623 gm0830 species Creatine 586 HMDB0000064 CHEBI:16919 Faecalibacterium 216851 gm0326 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Succinivibrio 83770 gm0629 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Macrococcus 69965 gm0831 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Bilophila 35832 gm0115 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Enterococcus 1350 gm0287 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Dorea 189330 gm0266 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Clostridium 1485 gm0187 genus 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Faecalibacterium prausnitzii 853 gm0327 species 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Photobacterium angustum 661 gm0832 species 2-Imino-1-methylimidazolidin-4-one 588 HMDB0000562 CHEBI:16737 Escherichia 561 gm0304 genus Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Paraprevotella 577309 gm0500 genus Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Akkermansia 239934 gm0029 genus Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Carnobacterium 2747 gm0156 genus Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Ruminococcus flavefaciens 1265 gm0590 species Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Butyricicoccus pullicaecorum 501571 gm0135 species Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Mitsuokella multacida 52226 gm0450 species Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Bacteroides fragilis 817 gm0082 species Glycocholic acid 10140 HMDB0000138 CHEBI:17687 Enterococcus 1350 gm0287 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Dermacoccus 57495 gm0833 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Kocuria 57493 gm0834 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Roseburia 841 gm0571 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Eggerthella lenta 84112 gm0695 species 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Bacteroides fragilis 817 gm0082 species 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Oscillospira 119852 gm0486 genus Citric acid 311 HMDB0000094 CHEBI:30769 Acinetobacter 469 gm0012 genus 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Microbacterium 33882 gm0835 genus 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Dysgonomonas 156973 gm0270 genus 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Bulleidia 118747 gm0129 genus 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Oscillospira 119852 gm0486 genus 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Bacteroides caccae 47678 gm0079 species 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Kocuria rhizophila 72000 gm0836 species 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Pseudomonas fragi 296 gm0837 species 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 Ruminococcus bromii 40518 gm0588 species 4-Pyridoxic acid 6723 HMDB0000017 CHEBI:17405 END-49 gm0838 strain Enterodiol 115089 HMDB0005056 CHEBI:81556 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii CNCM I-4543 gm0979 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii L2-6 718252 gm0934 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii CNCM I-4573 gm0980 strain Butyrate 104775 CHEBI:17968 Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 1006003 gm0986 strain Choline 305 HMDB0000097 CHEBI:15354 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 1006003 gm0986 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Eubacterium ramulus 39490 gm0737 species Quercetin 5280343 HMDB0005794 CHEBI:16243 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Eubacterium ramulus 39490 gm0737 species Luteolin 5280445 HMDB0005800 CHEBI:15864 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Bifidobacterium pseudocatenulatum WC 0400 gm0987 strain Hesperidin 10621 HMBD0003265 CHEBI:28775 Aglycone CHEBI:166892 Bifidobacterium pseudocatenulatum WC 0401 gm0988 strain Hesperidin 10621 HMBD0003265 CHEBI:28775 Aglycone CHEBI:166892 Bifidobacterium pseudocatenulatum WC 0403 gm0989 strain Hesperidin 10621 HMBD0003265 CHEBI:28775 Aglycone CHEBI:166892 Bifidobacterium pseudocatenulatum WC 0407 gm0990 strain Hesperidin 10621 HMBD0003265 CHEBI:28775 Aglycone CHEBI:166892 Bifidobacterium pseudocatenulatum WC 0408 gm0991 strain Hesperidin 10621 HMBD0003265 CHEBI:28775 Aglycone CHEBI:166892 Clostridium tyrobutyricum 1519 gm0693 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Butyrate 104775 CHEBI:17968 Eggerthella. sp. CAT-1 gm0992 species Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Eggerthella. sp. CAT-1 gm0992 species Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Bifidobacterium longum IPLA E44 gm0993 strain Exopolysaccharides CHEBI:72813 Lactate 91435 CHEBI:24996 Bifidobacterium adolescentis MB 114 gm0994 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium adolescentis MB 114 gm0995 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium adolescentis MB 114 gm0996 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium bifidum MB 254 gm0997 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium breve MB 234 gm0998 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium breve MB 235 gm0999 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium infantis MB 208 gm1000 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium lactis MB 238 gm1001 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium longum MB 201 gm1002 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium longum MB 207 gm1003 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium longum MB 219 gm1004 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium pseudocatenulatum MB 264 gm1005 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Enterococcus faecalis 1351 gm0288 species Levodopa 6047 HMDB0000181 CHEBI:15765 Veillonella ratti 103892 gm0697 species Propionate 104745 CHEBI:17272 Propionibacterium avidum 33010 gm0857 species Propionate 104745 CHEBI:17272 Eubacterium hallii 39488 gm0314 species Butyrate 104775 CHEBI:17968 Eubacterium limosum 1736 gm0315 species Butyrate 104775 CHEBI:17968 Desulfovibrio piger 901 gm0858 species Sulfate 1117 HMDB0001448 CHEBI:16189 Streptococcus sp. MRG-ICA-B 1705604 gm0859 species Baohuoside I 5488822 CHEBI:82619 Enterococcus sp. MRG-ICA-E 1710535 gm0860 species Baohuoside I 5488822 CHEBI:82619 bacterium MRG-PMF-1 1477104 gm0861 strain Baohuoside I 5488822 CHEBI:82619 bacterium MRG-PMF-1 1477104 gm0861 strain Icaritin 5318980 HMDB0139407 bacterium MRG-IFC-1 1449386 gm1007 strain Puerarin 5281807 HMDB0240265 CHEBI:8633 Daidzein 5281708 HMDB0003312 CHEBI:28197 bacterium MRG-IFC-2 1449387 gm1008 strain Puerarin 5281807 HMDB0240265 CHEBI:8633 Daidzein 5281708 HMDB0003312 CHEBI:28197 Enterococcus casseliflavus 37734 gm0738 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Formate 283 CHEBI:15740 Enterococcus casseliflavus 37734 gm0738 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Acetate 175 CHEBI:30089 Enterococcus casseliflavus 37734 gm0738 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 L-Lactate 5460161 CHEBI:16651 Enterococcus casseliflavus 37734 gm0738 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Ethanol 702 HMDB0000108 CHEBI:16236 Eubacterium ramulus 39490 gm0737 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Eubacterium ramulus 39490 gm0737 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Acetate 175 CHEBI:30089 Eubacterium ramulus 39490 gm0737 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Butyrate 104775 CHEBI:17968 Enterococcus sp. 41 gm1017 species Platycodin D 162859 CHEBI:70436 Bacillus sp.46 1266601 gm1018 species Platycodin D 162859 CHEBI:70436 Escherichia sp. 49A 1343183 gm1019 species Platycodin D 162859 CHEBI:70436 Escherichia sp.64 1343186 gm1020 species Platycodin D 162859 CHEBI:70436 Eggerthella lenta JCM 9979T gm1021 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Eggerthella sinensis JCM 14551T gm1022 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Eggerthella hongkongensis JCM 14552T gm1023 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-A10 gm1024 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-B20 gm1025 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-D53 gm1026 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-B9T gm1027 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-A10 gm1024 strain Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Adlercreutzia equolifaciens FJC-A161 gm1028 strain Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Succinivibrio dextrinosolvens 83771 gm0755 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Succinivibrio dextrinosolvens 83771 gm0755 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Succinivibrio dextrinosolvens 83771 gm0755 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Succinivibrio dextrinosolvens 83771 gm0755 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Bacteria Latreille et al. 1825 629395 gm0867 genus D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Bacteria Latreille et al. 1825 629395 gm0867 genus D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Bacteria Latreille et al. 1825 629395 gm0867 genus D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Bifidobacterium 1678 gm0105 genus Lactate 91435 CHEBI:24996 Blautia sp. MRG-PMF1 gm1029 species 5,7-Dimethoxyflavone 88881 HMDB0036620 CHEBI:3684 Chrysin 5281607 HMDB0036619 CHEBI:75095 Blautia sp. MRG-PMF1 gm1029 species 4',5,7-Trimethoxyflavone 79730 HMDB0030842 CHEBI:174981 Apigenin 5280443 HMDB0002124 CHEBI:18388 CEBAS 4A1 gm1030 strain Ellagic Acid 5281855 HMDB0002899 CHEBI:4775 3,9-Dihydroxybenzo[c]chromen-6-one 10376459 HMDB0142418 CEBAS 4A2 gm1031 strain Ellagic Acid 5281855 HMDB0002899 CHEBI:4775 3,9-Dihydroxybenzo[c]chromen-6-one 10376459 HMDB0142418 CEBAS 4A3 gm1032 strain Ellagic Acid 5281855 HMDB0002899 CHEBI:4775 3,9-Dihydroxybenzo[c]chromen-6-one 10376459 HMDB0142418 CEBAS 4A4 gm1033 strain Ellagic Acid 5281855 HMDB0002899 CHEBI:4775 3,9-Dihydroxybenzo[c]chromen-6-one 10376459 HMDB0142418 Clostridium sp. TM-40 371143 gm0893 species Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Clostridium 1485 gm0187 genus DL-Alanine 602 HMDB0062251 CHEBI:16449 Pyruvate 107735 CHEBI:15361 Clostridium 1485 gm0187 genus Glycine 750 HMDB0000123 CHEBI:15428 Acetyl phosphate(2-) 4183249 CHEBI:22191 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain Acetate 175 CHEBI:30089 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Propionate 104745 CHEBI:17272 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Histidine 6274 HMDB0000177 CHEBI:15971 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 L-Cysteine 5862 HMDB0000574 CHEBI:17561 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Cystine 595 CHEBI:17376 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Glutathione 124886 HMDB0000125 CHEBI:16856 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Asparagine 6267 HMDB0000168 CHEBI:17196 Bacteroides thetaiotaomicron VPI-5482 226186 gm1036 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 DL-Alanine 602 HMDB0062251 CHEBI:16449 Clostridium sporogenes ATCC15579 gm1037 strain Levodopa 6047 HMDB0000181 CHEBI:15765 Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Clostridium sporogenes ATCC15579 gm1037 strain 5-Hydroxytryptophan 144 CHEBI:28171 2-Hydroxy-3-(5-hydroxy-1H-indol-3-yl)propanoic acid 192215 "Clostridium sporogenes Ll.LtrB-eryR ΩfldC" gm1038 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-lactic acid 92904 CHEBI:24813 "Clostridium sporogenes Ll.LtrB-eryR ΩfldC" gm1038 strain Tyrosine 6057 HMDB0000158 CHEBI:17895 2-Hydroxy-3-(4-hydroxyphenyl)propanoic acid 9378 HMDB0000755 CHEBI:17385 "Clostridium sporogenes Ll.LtrB-eryR ΩfldC" gm1038 strain Levodopa 6047 HMDB0000181 CHEBI:15765 3-(3,4-Dihydroxyphenyl)-2-hydroxypropanoic acid 439435 HMDB0003503 CHEBI:17807 Escherichia sp. 4 1343180 gm0805 species Diosmetin 7-O-beta-D-glucopyranoside 11016019 Diosmetin 5281612 HMDB0029676 CHEBI:4630 Escherichia sp. 4 1343180 gm0805 species Diosmetin 7-O-beta-D-glucopyranoside 11016019 Acacetin 5280442 CHEBI:15335 Bacteroides distasonis 823 gm0818 species Succinate 160419 CHEBI:30031 Bacteroides distasonis 823 gm0818 species Bile acid 439520 CHEBI:22868 Clostridioides difficile 1496 gm0804 species Clindamycin 446598 HMDB0015321 CHEBI:3745 Valerate 114781 CHEBI:31011 Clostridioides difficile 1496 gm0804 species Clindamycin 446598 HMDB0015321 CHEBI:3745 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridioides difficile 1496 gm0804 species Clindamycin 446598 HMDB0015321 CHEBI:3745 Taurocholic acid 6675 HMDB0000036 CHEBI:28865 Clostridioides difficile 1496 gm0804 species Clindamycin 446598 HMDB0015321 CHEBI:3745 Succinate 160419 CHEBI:30031 Slackia equolifaciens 498718 gm0701 species Resveratrol 445154 HMDB0003747 CHEBI:45713 Dihydroresveratrol 185914 HMDB0240498 CHEBI:4582 Slackia equolifaciens 498718 gm0701 species Resveratrol 445154 HMDB0003747 CHEBI:45713 Lunularin 181511 CHEBI:6568 Slackia equolifaciens 498718 gm0701 species Resveratrol 445154 HMDB0003747 CHEBI:45713 3,4-Dihydroxy-trans-stilbene 10176710 Adlercreutzia equolifaciens 446660 gm0699 species Resveratrol 445154 HMDB0003747 CHEBI:45713 Dihydroresveratrol 185914 HMDB0240498 CHEBI:4582 Adlercreutzia equolifaciens 446660 gm0699 species Resveratrol 445154 HMDB0003747 CHEBI:45713 Lunularin 181511 CHEBI:6568 Adlercreutzia equolifaciens 446660 gm0699 species Resveratrol 445154 HMDB0003747 CHEBI:45713 3,4-Dihydroxy-trans-stilbene 10176710 Dictyostelium discoideum 44689 gm0806 species 1-((3,5-Dichloro)-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 123886 CHEBI:64598 1-(3-Chloro-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 3081033 Dictyostelium discoideum 44689 gm0806 species 1-((3,5-Dichloro)-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 123886 CHEBI:64598 1-(3-Chloro-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 3081033 Dictyostelium discoideum 44689 gm0806 species 1-((3,5-Dichloro)-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 123886 CHEBI:64598 1-(3-Chloro-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 3081033 Dictyostelium discoideum 44689 gm0806 species 1-((3,5-Dichloro)-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 123886 CHEBI:64598 1-(3-Chloro-2,6-dihydroxy-4-methoxyphenyl)-1-hexanone 3081033 Salmonella enterica 28901 gm0692 species Butyrate 104775 CHEBI:17968 Salmonella enterica 28901 gm0692 species Butyrate 104775 CHEBI:17968 Salmonella enterica 28901 gm0692 species Butyrate 104775 CHEBI:17968 Bifidobacterium longum 216816 gm0112 species Xyloglucan Heptasaccharide 44630346 HMDB0006611 Acetate 175 CHEBI:30089 Bifidobacterium longum 216816 gm0112 species Xyloglucan Heptasaccharide 44630346 HMDB0006611 Lactate 91435 CHEBI:24996 Escherichia coli BW25113 pBeloBAC gm1043 strain Colibactin 138805674 CHEBI:156303 Escherichia coli BACpks gm1044 strain Colibactin 138805674 CHEBI:156303 Slackia equolifaciens DZE gm1046 strain Soybean Isoflavones 70267806 Equol 91469 HMDB0002209 CHEBI:34741 Slackia isoflavoniconvertens 572010 gm0702 species Daidzein 5281708 HMDB0003312 CHEBI:28197 5-OH-Equol 9795113 Slackia isoflavoniconvertens 572010 gm0702 species Genistein 5280961 HMDB0003217 CHEBI:28088 5-OH-Equol 9795113 Cronobacter sakazakii 28141 gm0807 species beta-D-Fructofuranose 439709 CHEBI:28645 Marvinbryantia formatexigens 168384 gm0432 species beta-D-Fructofuranose 439709 CHEBI:28645 Ruminococcus gnavus 33038 gm0592 species beta-D-Fructofuranose 439709 CHEBI:28645 Weissella paramesenteroides 1249 gm0808 species beta-D-Fructofuranose 439709 CHEBI:28645 Escherichia coli HGH21 gm1047 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Escherichia coli HGH21 gm1047 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Escherichia coli HGH6 gm1048 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Escherichia coli HGH6 gm1048 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Escherichia coli HGH6 gm1048 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Escherichia coli HGH6 gm1048 strain Genistein 5280961 HMDB0003217 CHEBI:28088 Dihydrogenistein 9838356 HMDB0005897 CHEBI:34707 Alistipes indistinctus YIT 12060 742725 gm1049 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Alistipes indistinctus YIT 12060 742725 gm1049 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 (10-[(Acetyloxy)methyl]-9-anthryl)methyl acetate 613145 Alistipes indistinctus YIT 12060 742725 gm1049 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Isovaleric acid 10430 HMDB0000718 CHEBI:28484 Odoribacter laneus YIT 12061 742817 gm1050 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Odoribacter laneus YIT 12061 742817 gm1050 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 (10-[(Acetyloxy)methyl]-9-anthryl)methyl acetate 613145 Odoribacter laneus YIT 12061 742817 gm1050 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Isovaleric acid 10430 HMDB0000718 CHEBI:28484 Paraprevotella clara YIT 11840 762968 gm1051 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Paraprevotella clara YIT 11840 762968 gm1051 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 (10-[(Acetyloxy)methyl]-9-anthryl)methyl acetate 613145 Paraprevotella xylaniphila YIT 11841 762982 gm1052 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Paraprevotella xylaniphila YIT 11841 762982 gm1052 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 (10-[(Acetyloxy)methyl]-9-anthryl)methyl acetate 613145 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Palmitic acid 985 HMDB0000220 CHEBI:15756 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain Dihydrocaffeic acid 348154 HMDB0000423 CHEBI:48400 Faecalibacterium prausnitzii A2-165 411483 gm0932 strain D-Glucuronic Acid 94715 HMDB0000127 CHEBI:42717 Salmonella 590 gm0812 genus Retinol 445354 CHEBI:17336 Tretinoin 444795 CHEBI:15367 Salmonella 590 gm0812 genus Retinol 445354 CHEBI:17336 Tretinoin 444795 CHEBI:15367 Salmonella 590 gm0812 genus Retinol 445354 CHEBI:17336 Tretinoin 444795 CHEBI:15367 Candidatus Arthromitus 49082 gm0145 genus Trimethylamine 1146 HMDB0000906 CHEBI:18139 Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Lachnospiraceae 186803 gm0386 family Trimethylamine 1146 HMDB0000906 CHEBI:18139 Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Lactobacillus paracasei 1597 gm0766 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 10-Keto-12Z-octadecenoic acid 24970825 Escherichia 561 gm0304 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Escherichia 561 gm0304 genus Indoxyl sulfate 10258 HMDB0000682 CHEBI:43355 Shigella 620 gm0602 genus Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Shigella 620 gm0602 genus Indoxyl sulfate 10258 HMDB0000682 CHEBI:43355 Bacteroides sp. 45 gm1056 species Quercitrin 5280459 HMDB0033751 CHEBI:17558 Hydroxyquercitrin 129887767 Bacteroides sp. 45 gm1056 species Quercitrin 5280459 HMDB0033751 CHEBI:17558 Quercetin 5280343 HMDB0005794 CHEBI:16243 Bacteroides sp. 45 gm1056 species Quercitrin 5280459 HMDB0033751 CHEBI:17558 3,4-Dihydroxybenzoic acid 72 HMDB0001856 CHEBI:36062 Acidipropionibacterium acidipropionici ATCC 4875 1171373 gm1058 strain D-Sorbitol 5780 CHEBI:17924 Propionate 104745 CHEBI:17272 Acidipropionibacterium acidipropionici ATCC 4875 1171373 gm1058 strain D-Sorbitol 5780 CHEBI:17924 Succinate 160419 CHEBI:30031 Eubacterium 1730 gm0309 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Eubacterium 1730 gm0309 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Eubacterium 1730 gm0309 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Enterococcus 1350 gm0287 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Enterococcus 1350 gm0287 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Enterococcus 1350 gm0287 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bacteroides 816 gm0077 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bacteroides 816 gm0077 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bacteroides 816 gm0077 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bifidobacterium 1678 gm0105 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bifidobacterium 1678 gm0105 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Bifidobacterium 1678 gm0105 genus Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 human intestinal bacterium SNU-Julong732 239760 gm1063 strain Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Clostridium sp. HGH6 gm1064 species daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Eubacterium limosum ATCC 8486 gm1065 strain Biochanin A 5280373 HMDB0002338 CHEBI:17574 Genistein 5280961 HMDB0003217 CHEBI:28088 Eubacterium limosum ATCC 8486 gm1065 strain Formononetin 5280378 HMDB0005808 CHEBI:18088 Daidzein 5281708 HMDB0003312 CHEBI:28197 Eubacterium limosum ATCC 8486 gm1065 strain Glycitein 5317750 HMDB0005781 CHEBI:34778 6,7,4'-Trihydroxyisoflavone 5284649 HMDB0031715 CHEBI:74957 Lactobacillus plantarum IFPL935 gm1067 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 5-(3,4-Dihydroxyphenyl)-valerolactone 45093073 Lactobacillus plantarum IFPL935 gm1067 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 4-Hydroxy-(3',4'-dihydroxyphenyl)-valeric acid 52920332 HMDB0041679 CHEBI:137478 Bifidobacterium 1678 gm0105 genus Folic acid 135398658 HMDB0000121 CHEBI:27470 Eubacterium limosum 1736 gm0315 species Glycitein 5317750 HMDB0005781 CHEBI:34778 6,7,4'-Trihydroxyisoflavone 5284649 HMDB0031715 CHEBI:74957 Eubacterium limosum 1736 gm0315 species Glycitein 5317750 HMDB0005781 CHEBI:34778 Dihydroglycitein 101101166 CHEBI:174736 Escherichia coli 562 gm0305 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Caffeic acid 689043 HMDB0001964 CHEBI:16433 Escherichia coli 562 gm0305 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Quinic acid 6508 HMDB0003072 CHEBI:17521 Bifidobacterium animalis 28025 gm0107 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Caffeic acid 689043 HMDB0001964 CHEBI:16433 Bifidobacterium animalis 28025 gm0107 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Quinic acid 6508 HMDB0003072 CHEBI:17521 Lactobacillus gasseri 1596 gm0399 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Caffeic acid 689043 HMDB0001964 CHEBI:16433 Lactobacillus gasseri 1596 gm0399 species Chlorogenic acid 1794427 HMDB0003164 CHEBI:16112 Quinic acid 6508 HMDB0003072 CHEBI:17521 Lactobacillus fermentum 1613 gm0398 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Weissella confusa 1583 gm0763 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Weissella confusa 1583 gm0763 species D-Fructose 2723872 HMDB0000660 CHEBI:15824 Ethanol 702 HMDB0000108 CHEBI:16236 Saccharomyces cerevisiae 4932 gm0816 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Saccharomyces cerevisiae 4932 gm0816 species D-Fructose 2723872 HMDB0000660 CHEBI:15824 Ethanol 702 HMDB0000108 CHEBI:16236 Bacteroides 816 gm0077 genus Phosphoenolpyruvate 1005 HMDB0000263 CHEBI:44897 Oxalacetic acid 970 HMDB0000223 CHEBI:30744 Bacteroides 816 gm0077 genus Fumarate 5460307 CHEBI:29806 Succinate 160419 CHEBI:30031 Bacteroides 816 gm0077 genus Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Eubacterium rectale 39491 gm0316 species Acetate 175 CHEBI:30089 Butyrate 104775 CHEBI:17968 Clostridium pasteurianum 1501 gm0817 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Clostridium pasteurianum 1501 gm0817 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Butyrate 104775 CHEBI:17968 Lactococcus sp. 20-92 gm1068 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Lactococcus sp. 20-92 gm1068 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Bacteroides sp. MANG 298389 gm1069 species Mangiferin 5281647 HMDB0034410 CHEBI:6682 Aglycone CHEBI:166892 Bacteroides sp. MANG 298389 gm1069 species Mangiferin 5281647 HMDB0034410 CHEBI:6682 Norathyriol 5281656 CHEBI:7622 Eubacterium limosum 1736 gm0315 species Butyrate 104775 CHEBI:17968 Eubacterium limosum 1736 gm0315 species Acetate 175 CHEBI:30089 Eubacterium limosum 1736 gm0315 species Propionate 104745 CHEBI:17272 Eubacterium limosum 1736 gm0315 species Butyrate 104775 CHEBI:17968 Bacillus sp. 52 gm1070 species Rutin 5280805 HMDB0003249 CHEBI:28527 Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Bacillus sp. 52 gm1070 species Rutin 5280805 HMDB0003249 CHEBI:28527 Leucocianidol 71629 CHEBI:15758 Bacteroides sp. 45 gm1056 species Rutin 5280805 HMDB0003249 CHEBI:28527 Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Bacteroides sp. 45 gm1056 species Rutin 5280805 HMDB0003249 CHEBI:28527 Leucocianidol 71629 CHEBI:15758 Bacteroides sp. 42 gm1071 species Rutin 5280805 HMDB0003249 CHEBI:28527 Leucocianidol 71629 CHEBI:15758 Bacteroides sp. 22 gm1072 species Rutin 5280805 HMDB0003249 CHEBI:28527 Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Veillonella sp. 32 gm1073 species Rutin 5280805 HMDB0003249 CHEBI:28527 Leucocianidol 71629 CHEBI:15758 Ruminococcus bromii 40518 gm0588 species Phytoestrogens 56842207 CHEBI:76989 Propionate 104745 CHEBI:17272 Ruminococcus bromii 40518 gm0588 species Phytoestrogens 56842207 CHEBI:76989 Glycerol 753 HMDB0000131 CHEBI:17754 Bifidobacterium longum HY8001 gm1074 strain Geniposide 107848 CHEBI:5299 Genipin 442424 HMDB0035830 CHEBI:5298 Bacteroides fragilis 817 gm0082 species Geniposide 107848 CHEBI:5299 Genipin 442424 HMDB0035830 CHEBI:5298 Clostridium scindens ATCC35704 411468 gm1076 strain Bile acid 439520 CHEBI:22868 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium scindens ATCC35704 411468 gm1076 strain Bile acid 439520 CHEBI:22868 Lithocholic acid 9903 HMDB0000761 CHEBI:16325 Lactobacillus 1578 gm0393 genus Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-carboxaldehyde 10256 HMDB0029737 CHEBI:28238 Lactobacillus Plantarum 1590 gm0405 species Linoleic Acid 5280450 HMDB0000673 CHEBI:17351 10-Oxo-11-octadecenoic acid 10308378 Lactobacillus Plantarum 1590 gm0405 species Linoleic Acid 5280450 HMDB0000673 CHEBI:17351 10-Oxo-11-octadecenoic acid 10308378 Bifidobacterium dentium 1689 gm0111 species Rutin 5280805 HMDB0003249 CHEBI:28527 Quercetin 5280343 HMDB0005794 CHEBI:16243 Bifidobacterium dentium 1689 gm0111 species Poncirin 442456 HMDB0037487 CHEBI:66773 Ponciretin 25201019 Bacteroidetes 976 gm0090 phylum Acetate 175 CHEBI:30089 Bacteroidetes 976 gm0090 phylum Acetate 175 CHEBI:30089 Bacteroidetes 976 gm0090 phylum Acetate 175 CHEBI:30089 Bacteroidetes 976 gm0090 phylum Acetate 175 CHEBI:30089 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus paracasei JS1 gm1077 strain Isoflavone 72304 CHEBI:18220 Equol 91469 HMDB0002209 CHEBI:34741 Bifidobacterium catenulatum subsp. kashiwanohense APCKJ1 gm1078 strain Galbeta1,3GlcNAc 440994 CHEBI:27707 Lacto-N-tetraose 440993 HMDB0006566 CHEBI:30248 Bifidobacterium catenulatum subsp. kashiwanohense APCKJ1 gm1078 strain N-Acetyl-D-lactosamine 9800166 CHEBI:60152 beta-D-Gal-(1->4)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc 9831622 HMDB0006567 CHEBI:60239 Atopobium parvulum 1382 gm0819 species Butyrate 104775 CHEBI:17968 Atopobium parvulum 1382 gm0819 species Butyrate 104775 CHEBI:17968 Prevotella copri 165179 gm0536 species Butyrate 104775 CHEBI:17968 Prevotella copri 165179 gm0536 species Butyrate 104775 CHEBI:17968 Slackia sp. NATTS 647703 gm0894 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Escherichia coli HGH21 gm1047 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Clostridium sp. HGH6 gm1064 species Daidzein 5281708 HMDB0003312 CHEBI:28197 2,4-Dioxopentanedioic acid 444873 CHEBI:42056 Clostridium sp. HGH136 gm1079 species Daidzein 5281708 HMDB0003312 CHEBI:28197 6'-Hydroxy-O-desmethylangolensin 20601635 HMDB0041695 CHEBI:88662 Catenibacillus scindens 673271 gm1080 species Puerarin 5281807 HMDB0240265 CHEBI:8633 Daidzein 5281708 HMDB0003312 CHEBI:28197 Catenibacillus scindens 673271 gm1080 species Vitexin 5280441 CHEBI:16954 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Catenibacillus scindens 673271 gm1080 species O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 3-(2,4-Dihydroxyphenyl)propanoic acid 96384 HMDB0126386 Catenibacillus scindens 673271 gm1080 species 6'-Hydroxy-O-desmethylangolensin 20601635 HMDB0041695 CHEBI:88662 3-(2,4-Dihydroxyphenyl)propanoic acid 96384 HMDB0126386 Eggerthella sp. SDG-2 426610 gm1081 species (3R)-flavan-3-ols 1,3-Diphenylpropan-2-ol 138478 HMDB0135544 Eggerthella sp. SDG-2 426610 gm1081 species (3S)-flavan-3-ols 1,3-Diphenylpropan-2-ol 138478 HMDB0135544 Enterococcus 1350 gm0287 genus Levodopa 6047 HMDB0000181 CHEBI:15765 Dopamine 681 HMDB0000073 CHEBI:18243 Faecalibacterium prausnitzii 853 gm0327 species PhIP-N2-β-D-glucuronide 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine 1530 CHEBI:76290 Flavonifractor plautii 292800 gm0339 species 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine 1530 CHEBI:76290 7-Hydroxy-5-methyl-3-phenyl-6,7,8,9-tetrahydropyrido[3',2':4,5]imidazo[1,2-a]pyrimidin-5-ium chloride 129849310 Blautia obeum 40520 gm0822 species 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine 1530 CHEBI:76290 7-Hydroxy-5-methyl-3-phenyl-6,7,8,9-tetrahydropyrido[3',2':4,5]imidazo[1,2-a]pyrimidin-5-ium chloride 129849310 Anaerobutyricum hallii 39488 gm0776 species 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine 1530 CHEBI:76290 7-Hydroxy-5-methyl-3-phenyl-6,7,8,9-tetrahydropyrido[3',2':4,5]imidazo[1,2-a]pyrimidin-5-ium chloride 129849310 Lactobacillus reuteri 1598 gm0407 species 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine 1530 CHEBI:76290 7-Hydroxy-5-methyl-3-phenyl-6,7,8,9-tetrahydropyrido[3',2':4,5]imidazo[1,2-a]pyrimidin-5-ium chloride 129849310 Enterococcus avium EFEL009 gm1088 strain Rutin 5280805 HMDB0003249 CHEBI:28527 Quercitrin 5280459 HMDB0033751 CHEBI:17558 Enterococcus durans M4-5 gm1006 strain Butyrate 104775 CHEBI:17968 Enterococcus durans M4-5 gm1006 strain Butyrate 104775 CHEBI:17968 Enterococcus durans M4-5 gm1006 strain Butyrate 104775 CHEBI:17968 Enterococcus durans M4-5 gm1006 strain Butyrate 104775 CHEBI:17968 Enterococcus durans M4-5 gm1006 strain Butyrate 104775 CHEBI:17968 Lactobacillus casei Shirota gm0953 strain Pipecolic acid 849 HMDB0000070 CHEBI:17964 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Adlercreutzia equolifaciens JCM 14793 gm0887 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Asaccharobacter celatus JCM 14811 gm0886 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Slackia equolifaciens JCM 16059 gm1096 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Slackia isoflavoniconvertens JCM 16137 gm1097 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Adlercreutzia equolifaciens JCM 14793 gm0887 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Asaccharobacter celatus JCM 14811 gm0886 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Slackia isoflavoniconvertens JCM 16137 gm1097 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Adlercreutzia equolifaciens 446660 gm0699 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bifidobacterium bifidum 1681 gm0108 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bifidobacterium longum H-1 gm1098 strain Ginsenoside Rb1 9898279 HMDB0035892 CHEBI:67989 Ginsenoside-Rd 24721561 HMDB0035778 CHEBI:67988 Bifidobacterium longum H-1 gm1098 strain Loganin 87691 CHEBI:15771 Loganetin 10466307 Bifidobacterium longum H-1 gm1098 strain Arctiin 100528 CHEBI:80793 Arctigenin 64981 CHEBI:79 Bifidobacterium longum H-1 gm1098 strain Arbutin 440936 HMDB0029943 CHEBI:18305 Hydroquinone 785 HMDB0002434 CHEBI:17594 Clostridium butyricum ATCC 19398 1492 gm1099 strain Butyrate 104775 CHEBI:17968 Clostridium butyricum ATCC 19398 1492 gm1099 strain Butyrate 104775 CHEBI:17968 Clostridium butyricum ATCC 19398 1492 gm1099 strain Butyrate 104775 CHEBI:17968 Ruminococcus 1263 gm0587 genus Ursodeoxycholic acid 31401 HMDB0000946 CHEBI:9907 Phascolarctobacterium 33024 gm0524 genus Phenylalanine 6140 HMDB0000159 CHEBI:17295 Acidaminobacter 65402 gm0704 genus Glutamic acid 33032 HMDB0000148 CHEBI:16015 Phascolarctobacterium 33024 gm0524 genus Serine 5951 HMDB0000187 CHEBI:17115 Acidaminobacter 65402 gm0704 genus L-Threonine 6288 HMDB0000167 CHEBI:16857 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli 562 gm0305 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Bifidobacterium pseudocatenulatum B7003 gm1100 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium longum subsp. infantis B7875 gm1101 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium adolescentis B7304 gm1102 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium catenulatum B7377 gm1103 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium breve B7824 gm1104 strain Daidzin 107971 HMDB0033991 CHEBI:42202 Daidzein 5281708 HMDB0003312 CHEBI:28197 Bifidobacterium pseudocatenulatum B7003 gm1100 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Bifidobacterium longum subsp. infantis B7875 gm1101 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Bifidobacterium adolescentis B7304 gm1102 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Bifidobacterium catenulatum B7377 gm1103 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Bifidobacterium breve B7824 gm1104 strain Genistin 5281377 HMDB0033988 CHEBI:27514 Genistein 5280961 HMDB0003217 CHEBI:28088 Bifidobacterium pseudocatenulatum B7003 gm1100 strain Glycitin 187808 HMDB0002219 CHEBI:80373 Glycitein 5317750 HMDB0005781 CHEBI:34778 Bifidobacterium longum subsp. infantis B7875 gm1101 strain Glycitin 187808 HMDB0002219 CHEBI:80373 Glycitein 5317750 HMDB0005781 CHEBI:34778 Bifidobacterium adolescentis B7304 gm1102 strain Glycitin 187808 HMDB0002219 CHEBI:80373 Glycitein 5317750 HMDB0005781 CHEBI:34778 Bifidobacterium catenulatum B7377 gm1103 strain Glycitin 187808 HMDB0002219 CHEBI:80373 Glycitein 5317750 HMDB0005781 CHEBI:34778 Bifidobacterium breve B7824 gm1104 strain Glycitin 187808 HMDB0002219 CHEBI:80373 Glycitein 5317750 HMDB0005781 CHEBI:34778 Bifidobacterium pseudocatenulatum B7003 gm1100 strain Astragalin 5282102 HMDB0037429 CHEBI:30200 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Bifidobacterium longum subsp. infantis B7875 gm1101 strain Astragalin 5282102 HMDB0037429 CHEBI:30200 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Bifidobacterium adolescentis B7304 gm1102 strain Astragalin 5282102 HMDB0037429 CHEBI:30200 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Bifidobacterium catenulatum B7377 gm1103 strain Astragalin 5282102 HMDB0037429 CHEBI:30200 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Bifidobacterium breve B7824 gm1104 strain Astragalin 5282102 HMDB0037429 CHEBI:30200 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Emergencia timonensis SP2-71.3 gm1105 strain gamma-Butyrobetaine hydrochloride 71314459 Trimethylamine 1146 HMDB0000906 CHEBI:18139 Clostridium sporogenes ATCC 15579 471871 gm1012 strain Phenylalanine 6140 CHEBI:17295 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Clostridium sporogenes ATCC 15579 471871 gm1012 strain Tyrosine 6057 HMDB0000158 CHEBI:17895 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Clostridium sporogenes ATCC 15579 471871 gm1012 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Peptostreptococcus anaerobius CC14N 1073365 gm1107 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium cadaveris BB88A gm1108 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium cadaveris CC44 001G 1073356 gm1109 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium cadaveris CC40 001C 1073356 gm1110 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Streptococcus mutans 1309 gm0713 species Urocanic acid 736715 HMDB0000301 CHEBI:30817 5-Hydroxy-1H-imidazole-4-carboxamide 124343 CHEBI:88290 Streptococcus mutans 1309 gm0713 species Urocanic acid 736715 HMDB0000301 CHEBI:30817 5-Hydroxy-1H-imidazole-4-carboxamide 124343 CHEBI:88290 Eggerthella lenta 84112 gm0695 species Urocanic acid 736715 HMDB0000301 CHEBI:30817 5-Hydroxy-1H-imidazole-4-carboxamide 124343 CHEBI:88290 Eggerthella lenta 84112 gm0695 species Urocanic acid 736715 HMDB0000301 CHEBI:30817 5-Hydroxy-1H-imidazole-4-carboxamide 124343 CHEBI:88290 Bacteroides stercoris HJ-15 gm1113 strain Ginsenoside Rg3 9918693 HMDB0039546 CHEBI:67991 Ginsenoside Rh2 119307 CHEBI:77147 Eubacterium sp. A-44 394229 gm0715 species Ginsenoside Rg3 9918693 HMDB0039546 CHEBI:67991 Ginsenoside Rh2 119307 CHEBI:77147 Fusobacterium sp. K-60 gm0716 species Ginsenoside Rg3 9918693 HMDB0039546 CHEBI:67991 Ginsenoside Rh2 119307 CHEBI:77147 Eubacterium sp. A-44 394229 gm0715 species Ginsenoside Rh2 119307 HMDB0039546 CHEBI:77147 (20S)-Protopanaxadiol 11213350 CHEBI:75950 Bacteroides stercoris HJ-15 gm1113 species Ginsenoside Rh2 119307 HMDB0039546 CHEBI:77147 (20S)-Protopanaxadiol 11213350 CHEBI:75950 Fusobacterium sp. K-60 gm0716 species (20R)-Ginsenoside Rg3 46887680 CHEBI:67990 20(R)-Ginsenoside Rh2 54580480 CHEBI:172776 Bacteroides stercoris HJ-15 gm1113 strain (20R)-Ginsenoside Rg3 46887680 CHEBI:67990 20(R)-Ginsenoside Rh2 54580480 CHEBI:172776 Bacteroides stercoris HJ-15 gm1113 strain 20(R)-Ginsenoside Rh2 54580480 CHEBI:172776 Protopanaxadiol 9920281 CHEBI:76237 Blautia sp. AUH-JLD56 gm1114 species Arctigenin 64981 CHEBI:79 3'-desmethylarctigenin Ruminococcus 1263 gm0587 genus Glycerophospholipids CHEBI:37739 Roseburia inulinivorans A2–194(F) gm1116 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 Propionate 104745 CHEBI:17272 Roseburia inulinivorans A2–194(F) gm1116 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 Propanol 1031 CHEBI:28831 Roseburia inulinivorans A2–194(F) gm1116 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 Butyrate 104775 CHEBI:17968 Bacteroides caccae 47678 gm0079 species Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Clostridium sp. 1506 gm0210 species Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Escherichia coli 562 gm0305 species Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Firmicutes bacterium CAG110 gm1118 strain Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Firmicutes bacterium CAG129 gm1119 strain Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Firmicutes bacterium CAG176 gm1120 strain Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Subdoligranulum sp. 2053618 gm0721 species Ethyl phenyllactate, (-)- 9877619 HMDB0032618 Bacteroides caccae 47678 gm0079 species (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Clostridium sp. 1506 gm0210 species (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Escherichia coli 562 gm0305 species (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Firmicutes bacterium CAG110 gm1118 strain (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Firmicutes bacterium CAG129 gm1119 strain (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Firmicutes bacterium CAG176 gm1120 strain (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Subdoligranulum sp. 2053618 gm0721 species (R)-3-(4-Hydroxyphenyl)lactate 9548632 CHEBI:10980 Collinsella tanakaei YIT 12063(T) 742742 gm1129 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Collinsella tanakaei YIT 12063(T) 742742 gm1129 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Collinsella tanakaei YIT 12063(T) 742742 gm1129 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Collinsella tanakaei YIT YIT 12064 626935 gm1130 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Succinatimonas hippei YIT 12066(T) gm1131 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Succinatimonas hippei YIT 12066(T) gm1131 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Bacillus sp. 46 1266601 gm1132 species Avicularin 5490064 HMDB0030860 CHEBI:65460 Quercetin 5280343 HMDB0005794 CHEBI:16243 Bacillus sp. 46 1266601 gm1132 species Quercetin 5280343 HMDB0005794 CHEBI:16243 Quercitrin 5280459 HMDB0033751 CHEBI:17558 Bacillus sp. 46 1266601 gm1132 species Quercetin 5280343 HMDB0005794 CHEBI:16243 Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Bacillus sp. 46 1266601 gm1132 species Quercetin 5280343 HMDB0005794 CHEBI:16243 Quercimeritrin 5282160 CHEBI:28529 Bacillus sp. 46 1266601 gm1132 species Avicularin 5490064 HMDB0030860 CHEBI:65460 11-Methoxycurvularin 10381440 Clostridium scindens ATCC 35704 411468 gm1133 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Clostridium scindens ATCC 35704 411468 gm1133 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Clostridium scindens ATCC 35704 411468 gm1133 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Clostridium scindens ATCC 35704 411468 gm1133 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Hydrogen 783 HMDB0001362 CHEBI:18276 Parasutterella excrementihominis YIT 11859(T) gm1134 strain Propionate 104745 CHEBI:17272 Butyricimonas virosa MT12(T) gm1135 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Isobutyric acid 6590 HMDB0001873 CHEBI:16135 Butyricimonas virosa MT12(T) gm1135 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Butyrate 104775 CHEBI:17968 Butyricimonas synergistica MT01(T) gm1136 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Isobutyric acid 6590 HMDB0001873 CHEBI:16135 Butyricimonas synergistica MT01(T) gm1136 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Butyrate 104775 CHEBI:17968 Adlercreutzia equolifaciens MT4s-5 gm1054 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol Adlercreutzia equolifaciens MT4s-5 gm1054 strain (-)-Catechin 73160 HMDB0037953 CHEBI:33992 (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol Adlercreutzia equolifaciens MT4s-5 gm1054 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Eggerthella lenta JCM 9979 gm1137 strain (-)-Epicatechin 72276 HMDB0001871 CHEBI:90 (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol Eggerthella lenta JCM 9979 gm1137 strain Cianidanol 9064 HMDB0002780 CHEBI:15600 (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)-propan-2-ol Flavonifractor plautii MT42 gm1055 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii MT42 gm1055 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii MT42 gm1055 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii MT42 gm1055 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii MT42 gm1055 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii MT42 gm1055 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii MT42 gm1055 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3-hydroxyphenyl)-γ-valerolactone Flavonifractor plautii MT42 gm1055 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3-hydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3-hydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 29863 411475 gm1138 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3-hydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 49531 gm1139 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii ATCC 49531 gm1139 strain (2S)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 49531 gm1139 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3,4-dihydroxyphenyl) valeric acid Flavonifractor plautii ATCC 49531 gm1139 strain (2R)-1-(3,4-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3,4-dihydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 49531 gm1139 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii ATCC 49531 gm1139 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-4-hydroxy-5-(3-hydroxyphenyl) valeric acid Flavonifractor plautii ATCC 49531 gm1139 strain (2S)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4R)-5-(3-hydroxyphenyl)-γ-valerolactone Flavonifractor plautii ATCC 49531 gm1139 strain (2R)-1-(3-hydroxyphenyl)-3-(2,4,6-trihydroxyphenyl) propan-2-ol (4S)-5-(3-hydroxyphenyl)-γ-valerolactone Clostridium sp. HGH136 gm1140 species Daidzein 5281708 HMDB0003312 CHEBI:28197 O-Desmethylangolensin 89472 HMDB0004629 CHEBI:88902 Slackia isoflavoniconvertens DSM 22006 gm1141 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Slackia isoflavoniconvertens DSM 22006 gm1141 strain Genistein 5280961 HMDB0003217 CHEBI:28088 5-OH-Equol 9795113 Clostridium asparagiforme DSM 15981 518636 gm1010 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Clostridium asparagiforme DSM 15981 518636 gm1010 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Clostridium asparagiforme DSM 15981 518636 gm1010 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Ethanol 702 HMDB0000108 CHEBI:16236 Escherichia sp. 12 1343175 gm1149 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Quercitrin 5280459 HMDB0033751 CHEBI:17558 Escherichia sp. 12 1343175 gm1149 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Myricetin 5281672 HMDB0002755 CHEBI:18152 Enterococcus sp. 45 1343173 gm0884 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Myricetin 5281672 HMDB0002755 CHEBI:18152 Enterococcus sp. 45 1343173 gm0884 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Quercetin 5280343 HMDB0033751 CHEBI:16243 Escherichia sp. 33 1343178 gm1150 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Myricetin 5281672 HMDB0002755 CHEBI:18152 Escherichia sp. 33 1343178 gm1150 species Myricitrin 5281673 HMDB0034360 CHEBI:70082 Quercetin 5280343 HMDB0033751 CHEBI:16243 Blautia faecis M25(T) gm1152 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Blautia faecis M25(T) gm1152 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Dialister succinatiphilus YIT 11850 742743 gm0929 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Barnesiella intestinihominis YIT 11860(T) gm1154 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Barnesiella intestinihominis YIT 11860(T) gm1154 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Succinate 160419 CHEBI:30031 Enterococcus sp. 45 1343173 gm0884 species Cynaroside 5280637 HMDB0035588 CHEBI:27994 Luteolin 5280445 HMDB0005800 CHEBI:15864 Ruminococcus champanellensis 18P13(T) gm1156 strain D-(+)-Cellobiose 10712 CHEBI:17057 Acetate 175 CHEBI:30089 Ruminococcus champanellensis 18P13(T) gm1156 strain D-(+)-Cellobiose 10712 CHEBI:17057 Succinate 160419 CHEBI:30031 Lawsonibacter asaccharolyticus 3BBH22T gm1157 strain Acetate 175 CHEBI:30089 Lawsonibacter asaccharolyticus 3BBH22T gm1157 strain Butyrate 104775 CHEBI:17968 Eubacterium ramulus 39490 gm0737 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Enterococcus casseliflavus 37734 gm0738 species Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Quercetin 5280343 HMDB0005794 CHEBI:16243 Allisonella 209879 gm0041 genus type I collagen cross-linked c-telopeptide Klebsiella 570 gm0380 genus type I collagen cross-linked c-telopeptide Megasphaera 906 gm0435 genus type I collagen cross-linked c-telopeptide Allisonella 209879 gm0041 genus procollagen type 1 n-terminal propeptide Klebsiella 570 gm0380 genus procollagen type 1 n-terminal propeptide Megasphaera 906 gm0435 genus procollagen type 1 n-terminal propeptide Bacteroides fragilis 817 gm0082 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bacteroides ovatus 28116 gm0084 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bacteroides stercoris 46506 gm0717 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bacteroides thetaiotaomicron 818 gm0087 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bacteroides uniformis 820 gm0088 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Phocaeicola vulgatus 821 gm0874 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Oscillibacter 459786 gm0484 genus Pyruvate 107735 CHEBI:15361 p-Cresol sulfate 4615423 HMDB0011635 CHEBI:82914 Oscillibacter 459786 gm0484 genus Pyruvate 107735 CHEBI:15361 Indoxyl sulfate 10258 HMDB0000682 CHEBI:43355 Oscillibacter 459786 gm0484 genus Pyruvate 107735 CHEBI:15361 p-Cresol glucuronide 154035 HMDB0011686 CHEBI:87986 Oscillibacter 459786 gm0484 genus Pyruvate 107735 CHEBI:15361 Trimethylamine oxide 1145 HMDB0000925 CHEBI:15724 Clostridium sp. SDG-Mt85-3Db 1506 gm1169 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Bacteroides fragilis SDG-Mt85-5B 817 gm1170 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Bacteroides fragilis SDG-Mt85-4C 817 gm1171 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Bacteroides fragilis DIfE-05 817 gm1172 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Parabacteroides distasonis DSM 20701T 823 gm1173 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Bacteroides ovatus SDG-Mt85-3C 28116 gm1174 strain Secoisolariciresinol diglucoside 9917980 HMDB0036323 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Eggerthella lenta SECO-Mt75m3 84112 gm1175 strain Lariciresinol 332427 CHEBI:67246 Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Eggerthella lenta SECO-Mt75m3 84112 gm1175 strain Pinoresinol 73399 CHEBI:40 Lariciresinol 332427 CHEBI:67246 Blautia producta 33035 gm1176 species Matairesinol 119205 HMDB0035698 CHEBI:6698 2,3-Bis(3,4-dihydroxybenzyl)butyrolactone 500189 Blautia producta 33035 gm1176 species Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Enterodiol 115089 HMDB0005056 CHEBI:81556 Eubacterium sp. 142586 gm0880 species Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Enterodiol 115089 HMDB0005056 CHEBI:81556 Clostridium scindens 29347 gm0208 species Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Enterodiol 115089 HMDB0005056 CHEBI:81556 Eggerthella lenta 84112 gm0695 species Secoisolariciresinol 65373 HMDB0013692 CHEBI:65004 Enterodiol 115089 HMDB0005056 CHEBI:81556 Enterococcus faecalis 1351 gm0288 species Pinoresinol 73399 CHEBI:40 Lariciresinol 332427 CHEBI:67246 Eubacterium ramulus 39490 gm0737 species 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 CHEBI:50202 Naringenin chalcone 5280960 HMDB0029631 CHEBI:15413 Eubacterium ramulus 39490 gm0737 species Naringenin chalcone 5280960 HMDB0029631 CHEBI:15413 Phloretin 4788 HMDB0003306 CHEBI:17276 Eubacterium ramulus 39490 gm0737 species Phloretin 4788 HMDB0003306 CHEBI:17276 Phloroglucinol 359 HMDB0013675 CHEBI:16204 Eubacterium ramulus 39490 gm0737 species Phloretin 4788 HMDB0003306 CHEBI:17276 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Eubacterium ramulus 39490 gm0737 species Apigenin 5280443 HMDB0002124 CHEBI:18388 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 Eubacterium ramulus 39490 gm0737 species 5,7-Dihydroxy-2-(4-hydroxyphenyl)chroman-4-one 932 HMDB0128074 CHEBI:50202 Naringenin chalcone 5280960 HMDB0029631 CHEBI:15413 Eubacterium ramulus 39490 gm0737 species Naringenin chalcone 5280960 HMDB0029631 CHEBI:15413 Phloretin 4788 HMDB0003306 CHEBI:17276 Eubacterium ramulus 39490 gm0737 species Phloretin 4788 HMDB0003306 CHEBI:17276 Phloroglucinol 359 HMDB0013675 CHEBI:16204 Eubacterium ramulus 39490 gm0737 species Phloretin 4788 HMDB0003306 CHEBI:17276 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Parabacteroides distasonis 823 gm1177 species Kaempferol-3-O-gal-rham-7-O-rham 5281693 CHEBI:8878 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Bacteroides uniformis 820 gm0088 species Rutin 5280805 HMDB0003249 CHEBI:28527 Quercetin 5280343 HMDB0005794 CHEBI:16243 Bacteroides ovatus 28116 gm0084 species Rutin 5280805 HMDB0003249 CHEBI:28527 Quercetin 5280343 HMDB0005794 CHEBI:16243 Eubacterium limosum 1736 gm0315 species Glycitein 5317750 HMDB0005781 CHEBI:34778 6,7,4'-Trihydroxyisoflavone 5284649 HMDB0031715 CHEBI:74957 Bacteroides ovatus 28116 gm0084 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Streptococcus intermedius 1338 gm1178 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Blautia producta SNU-Julong 732 33035 gm1179 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Enterococcus faecium EPI1 1352 gm0948 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Lactobacillus mucosae EPI2 97478 gm0947 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Finegoldia magna EPI3 1260 gm0949 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Veillonella sp. EP 1926307 gm1180 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Blautia producta SNU-Julong 732 33035 gm1179 strain Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Eubacterium limosum 1736 gm0315 species Isoxanthohumol 513197 CHEBI:171798 8-Prenylnaringenin 480764 CHEBI:50207